The legume information system and associated online genomic resources
نویسندگان
چکیده
The Legume Information System (LIS; https://legumeinfo.org) houses genetic and genomic data, integrated in various online tools to allow comparative analyses. website database maintain data for more than two dozen species, particularly focusing on crop model species holding other diverse of taxonomic interest. Major analysis features include genome browsers, sequence-search tools, legume-focused gene families a phylogenetic tree viewer, annotation service (which places submitted into family tree), an interactive microsynteny pan-genome novel viewer variant maps viewers, Data Store sets such as assemblies annotations, InterMine instances querying tool viewing geographic distributions germplasm accessions. LIS also integrates with several legume resources including PeanutBase (https://peanutbase.org), SoyBase (https://soybase.org), Medicago Hapmap (https://medicagohapmap2.org), Alfalfa Breeder's Toolbox (https://alfalfatoolbox.org), the Federation (https://legumefederation.org).
منابع مشابه
Legume Genomics: From Genomic Resources to Molecular Breeding
With an explosive growth rate, especially in developing countries, the world population of 7.2 billion is expected to reach 9.6 billion by 2050. There is a need to produce about 70% more food to feed this predicted population. Legumes form important constituents of a vegetarian diet and are rich sources of dietary protein (Duranti and Gius, 1997). Legumes comprise the third largest family of fl...
متن کاملLegume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family
Legume Information System (LIS), at http://legumeinfo.org, is a genomic data portal (GDP) for the legume family. LIS provides access to genetic and genomic information for major crop and model legumes. With more than two-dozen domesticated legume species, there are numerous specialists working on particular species, and also numerous GDPs for these species. LIS has been redesigned in the last t...
متن کاملUse of Online Resources While Using a Clinical Information System
BACKGROUND Clinical information system (CIS) use is likely to evoke information needs, yet information resources use during CIS use has not been studied. METHODS We used CIS log files and a survey to characterize clinicians' use of resources and infobuttons (context-sensitive links from a CIS to specific resources) while using a CIS. RESULTS We examined 38,763 uses of resources and infobutt...
متن کاملThe Legume Information System (LIS): an integrated information resource for comparative legume biology
The Legume Information System (LIS) (http://www.comparative-legumes.org), developed by the National Center for Genome Resources in cooperation with the USDA Agricultural Research Service (ARS), is a comparative legume resource that integrates genetic and molecular data from multiple legume species enabling cross-species genomic and transcript comparisons. The LIS virtual plant interface allows ...
متن کاملCancer information resources: digital and online sources.
The Internet is becoming an increasingly important source of information on cancer. This article highlights major sites of credible information on cancer and describes the types of information each of these sites contains. Large directories that help point the visitor to additional cancer-related sites are described, as are searchable databases of information on cancer as a disease, its diagnos...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Legume science
سال: 2021
ISSN: ['2639-6181']
DOI: https://doi.org/10.1002/leg3.74